rs29820935 SNP Detail

Summary

• ID
  rs29820935
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:75990045 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTC TGGGATCTTG GTGTAAAGCA
  Y
  TGGGAATTAT TTCATTCAAA AATCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss39121663	mCV22680591	ABI	CRAMUS_MOUSE	f	SNP		C	C				T
ss52665253	NES15473176	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C		T		C		T	C	C		C
ss144639197	ENSMUSSNP2953236	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C
ss324437246	CHEV_13_75979374	CHEVERUD	SCREENING_POP	f	SNP											C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29820935					SNP	C	C	C	C	C	C	T	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52665253	NES15473176	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:75990045 () rs orientation: forward

Symbol	Name	Function Class
Glrx	glutaredoxin	within coordinates
Rr482794	regulatory region 482794	43 bp proximal
Rr482795	regulatory region 482795	1840 bp proximal
Tssr120402	transcription start site region 120402	1998 bp downstream
Tssr120403	transcription start site region 120403	1882 bp downstream
Tssr120404	transcription start site region 120404	1841 bp downstream