rs29821150 SNP Detail

Summary

• ID
  rs29821150
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:72961581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ACCCCCAACC ATACAATTGT TTTGTTGCTA CTTCCTAACA GGAATTTTGC TACTGCCGTG
  AATCATAATG TAAACAACTG AGGTGCAGGA TATCTGATGT GTGGCCCCTG TGGGAGTTAG
  GACCCAGAGG TTGAGAACCA TAGGTGATGG TGGGTCATGG GAGTCATGCC TTGGGTTCCA
  GTCTAGCCCT GCTTTGGATA CTGCTCTCTT GCTTTCCTGG TCTGGCTGCT GTAAAGAGCT
  CTGTCTACTA CACACTCCCT CTACCAGAGA GCAGCTTTCC CTGACACAAC AGACTAAAAC
  K
  CTAAGCCGAA TTCATCTTTC TTCTCCTAAG CTTCTCTGTC AGGTGTTCTG GCACAACACA
  AAAGCAACTC ATATGCATGC ACGCCCTGTG CAGGTCACCT TTATCCATCT TTGCTTCTTG
  GGCTAGCCAA AGCCGCATCC GCTTGTCACA GTTTTACAGC TTGTCTCCCA GAGCACGAGC
  TTTTAGCTTT AACTGCCATC TTTCCATCTT CCTTTTCCTA TGGAAGTGCC CACGCACTGG
  GAAGGATTAC TGCTTATCTA ATTTTTAGGG TCTCTGCCAG AAAAAAACTA AAATAAGCAG
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss45865144	mCV22994933	ABI	CRAMUS_MOUSE	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs29821150					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:72961581 () rs orientation: forward

Symbol	Name	Function Class
Rr399125	regulatory region 399125	1058 bp downstream
Tec	tec protein tyrosine kinase	within coordinates
Tssr46619	transcription start site region 46619	1138 bp downstream