rs29821345 SNP Detail

Summary

• ID
  rs29821345
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:33569784 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAACATGCA TCTTGAGGTA TGTGAGAATG TGCGTCTTGC
  GGTGTATGAG AACGTGCGTC TCGAGGTGTG TGGGAATGTG CGTCTCGAGG TGAGTGGGAA
  Y
  GTGCGTCTCG AGGTGAGTGG GAATGCCCTA AGGAGAAGTG GAGGATTTGC ATTTACCTCT
  CCTTTGTGAC CAGGGCAATG CTGTTAACAC CATCTTAAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss39618376	mCV24523869	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss146926336	ENSMUSSNP4905215	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss325579763	CHEV_18_33596385	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs29821345					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:33569784 () rs orientation: forward

Symbol	Name	Function Class
Nrep	neuronal regeneration related protein	288 bp downstream
Rr535500	regulatory region 535500	430 bp distal
Tssr152756	transcription start site region 152756	1573 bp downstream
Tssr152757	transcription start site region 152757	1603 bp downstream
Tssr152758	transcription start site region 152758	1890 bp downstream