rs29821424 SNP Detail

Summary

• ID
  rs29821424
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172850792 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAGA CAGGAGGAAA TCACTAAGAT
  Y
  ATATGACGGG GTGGAGGTGA CCATC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45366041	mCV22952089	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss148328146	ENSMUSSNP7146817	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T		C
ss320621298	CHEV_2_172834500	CHEVERUD	SCREENING_POP	f	SNP					T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs29821424					SNP	T	T	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172850792 () rs orientation: forward

Symbol	Name	Function Class
Rae1	ribonucleic acid export 1	within coordinates
Rr374300	regulatory region 374300	778 bp upstream