rs29821971 SNP Detail

Summary

• ID
  rs29821971
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:75152120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCGG AGGTGACCGG CCGCGCGCCG
  R
  AGGGCTGCGG GCCCGGAAGG TTGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39619079	mCV23942566	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss147488246	ENSMUSSNP6047682	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss325690721	CHEV_18_75178703	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29821971					SNP	G	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:75152120 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10229	CpG island 10229	within coordinates
Dym	dymeclin	within coordinates
Rr405742	regulatory region 405742	294 bp downstream
Rr540715	regulatory region 540715	243 bp distal
Rr540716	regulatory region 540716	within coordinates
Rr540717	regulatory region 540717	1991 bp proximal
Tssr151951	transcription start site region 151951	349 bp downstream
Tssr151952	transcription start site region 151952	233 bp downstream
Tssr151953	transcription start site region 151953	115 bp downstream