rs29822039 SNP Detail

Summary

• ID
  rs29822039
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:113171436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAC GGAAAAAAAG GATTAGAGTC
  M
  GTTAGGACGA AACGTTTTTG CTTTT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39121087	mCV23842489	ABI	CRAMUS_MOUSE	f	SNP	A	C	A	A
ss145256993	ENSMUSSNP5602638	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29822039					SNP	A	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:113171436 () rs orientation: forward

Symbol	Name	Function Class
Cdc20b	cell division cycle 20B	209 bp upstream
Cpgi6107	CpG island 6107	within coordinates
Gm61413	predicted gene, 61413	1800 bp downstream
Mir449c	microRNA 449c	1081 bp upstream
Mirc34	microRNA cluster 34, including Mir449a through Mir449c	1081 bp proximal
Rr486471	regulatory region 486471	within coordinates
Rr486472	regulatory region 486472	1202 bp proximal
Tssr121164	transcription start site region 121164	1848 bp downstream
Tssr121165	transcription start site region 121165	325 bp upstream