rs29822256 SNP Detail

Summary

• ID
  rs29822256
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:43156481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAA GGGTACCTAA ACGAAATGGA
  K
  CTGAGAATAC TAAAGTAGTC TGCAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39121295	mCV22967020	ABI	CRAMUS_MOUSE	f	SNP		T	T					G
ss61780349	NES17720679	PERLEGEN	MM_PANEL2	f	SNP	T		T	G	T	T	T		G	G	T	G	G	G	T	G
ss148934420	ENSMUSSNP2794614	ENSEMBL	ENSEMBL_Sanger	f	SNP			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29822256					SNP	T	T	T	G	T	T	T	G	G	G	T	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61780349	NES17720679	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:43156481 () rs orientation: forward

Symbol	Name	Function Class
Gm15809	predicted gene 15809	within coordinates
Gm61192	predicted gene, 61192	74 bp downstream
Phactr1	phosphatase and actin regulator 1	within coordinates
Rr388334	regulatory region 388334	915 bp upstream
Rr478223	regulatory region 478223	1848 bp proximal