rs29822837 SNP Detail

Summary

• ID
  rs29822837
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:118405400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TGTGCTGCCA CCAGGAACCA TGTCTGGGTC CGTGGCCCTG TAGTAACAGG GGTCTGCTAC
  CACCAATGGC CAGGCCGATG TCCCTGGTCT GACAGGTTGA TGTCTGAGGG TTATGCAGAA
  CCGGCCCCAC CCCTCACCTG ATCATCATGG CAGAGCTGGT CCTCTAAGGG GGATATGGGA
  GTAGCGGCCC TGACCCTGCC CTTAGCCAGC TGCAGTGCTT GGGAGAGCAG GCCCATACAC
  TGCAGGAGTT GCGGGTGAGC TGGCCCAAGG ATGTGAGCGT AGGAGAGCAG ACCCTGACAC
  Y
  ATCTTCCTTG TGGTGACATG GATAAGGGAC TGATCCCCCC CCCTCTTTTT GCTCTCACCA
  CCTGAGGAGA GCTGTCCCTG CCCCTCACCT GCTGCAGCTC TCAGGAGAGC AAGCCCCCAC
  ACCTCACCTG GACAGCACAG TGGAGCTGAC CCTGATGACC AGGGCTCAGG TGAACTGGCC
  CCAAGGGTGT GAGCACGGGG GAGCTGGCCC AGCAATTTTT TCCCCCTTTG GTTTTTCGAG
  ACAGGGTTTC TCTGTGTAGC CCTGGCTGTC CTGGAACTCA CTTTGTATGT AGACCAGGCT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45866640	mCV23380115	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29822837					SNP	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:118405400 () rs orientation: forward

Symbol	Name	Function Class
Gm25076	predicted gene, 25076	755 bp downstream
Gm73266	predicted gene, 73266	1908 bp upstream
Rr618847	regulatory region 618847	822 bp distal
Rr618848	regulatory region 618848	1490 bp proximal
Rr618849	regulatory region 618849	1859 bp proximal
Rr618850	regulatory region 618850	1930 bp proximal