rs29823380 SNP Detail

Summary

• ID
  rs29823380
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:127857312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACAGAAATT AATTTTTTAG TAATGATTTT AAAACCTCTG
  AAAAATAATT TGTAGGCCTG AGCTTGATTA GAAACTCCAA TGGTCAATTA AGAAATTTTA
  Y
  AAAATTTCTT CTGGAAAACG AGAGAATTCT TATTTTCACA ACTTATTTCA GGAGGCTGGA
  ATTATTCTGA TACCCAACAG ACAGACAGTA TAAAGGAGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45367965	mCV22732982	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29823380					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127857312 () rs orientation: forward

Symbol	Name	Function Class
Acoxl	acyl-Coenzyme A oxidase-like	within coordinates
Rr397292	regulatory region 397292	472 bp downstream
Rr564632	regulatory region 564632	495 bp distal
Tssr20037	transcription start site region 20037	205 bp downstream