rs29823404 SNP Detail

Summary

• ID
  rs29823404
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:55981760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACATGCAGA TACACACCGG
  GAGGAAAGCT ACAATCTTTC TGGGGCAGAG GCTCATGCAC AGCCCCCTTC ATTTTGATGC
  GTGACTTGGA GGAGGTTTGA GGTTTGACCT TCAAGTGAAT CTCAGTTCTC CTGTTCAGTG
  TGAGAGTTGG TCTCCAGATG GGGCAGGAGG GGTGGAAGAA AGGGGGTTCA CTGAAGCAGG
  W
  CGAGTTCTAT TCCACTACCC TTCCCACCTG TGCAGAGTCC GAAATATTTC TCTGTCCTTC
  AAGAAACCGG GAGACGGTGA TCTGGAGATG CCTGCATTGT TGTGGGAGTT AGAGGAGAGA
  CAGCCCAAGG ACCTGTGCTG ATCTGGGCTT AGTCAAATAG AATCTGGCAA AAGAATGGTT
  TAGTAATTTA ATTCTTGAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39123090	mCV25143047	ABI	CRAMUS_MOUSE	f	SNP	T	A	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29823404					SNP	T	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:55981760 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5690	CpG island 5690	1840 bp distal
Cpgi5691	CpG island 5691	1543 bp proximal
Gm28760	predicted gene 28760	1413 bp downstream
Gm47071	predicted gene, 47071	within coordinates
Pitx1	paired-like homeodomain transcription factor 1	Intron
Rr480569	regulatory region 480569	1142 bp distal