rs29823970 SNP Detail

Summary

• ID
  rs29823970
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:83477557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATTTTCTCC TTGAAATGAA TATATCACAT AGTATTGTAA
  AGTTGAAGTT TTATTCTCCA TTCACATATT GTTCCCAAAC AGTATATAAC ATTTGTTTAC
  Y
  TACAGCCAGA ATAATACTTT GAAATCAGCT TTGAGCAACA GAAATTCTGA TCGTAGACTA
  AGCAGAGCCT GTAATCGCAG CTGAGGCACA AGGATTTCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45367283	mCV23818115	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss146812174	ENSMUSSNP2348817	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss320367677	CHEV_2_83487370	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29823970					SNP	C	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:83477557 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11854	CpG island 11854	1944 bp distal
Rr57102	regulatory region 57102	1156 bp distal
Rr397084	regulatory region 397084	1601 bp upstream
Zc3h15	zinc finger CCCH-type containing 15	within coordinates