rs29824537 SNP Detail

Summary

• ID
  rs29824537
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:84107808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTGCGTG AGCAGTGGGT
  GGGAGTGAGT GGAGTGCGTG GGTGGAGACT TTCTGAAAGG GTGGCGCGTG TATGTCCTTA
  GCATGCTTTG GCCGTGCATG AAGCAGAGGA TTGCTTCATC CTGTGATGAA ATGCTGAGAC
  TGTGGAGAAT AAAAATTTGA ACCCTGCCGA CCTAAAAAGG GCTTGAGCTG TGTTCACATA
  R
  AGCGTCCAGA GTACACCAAT GATTTGTTAG AAGTGGAAAT GAGAATAGAC TGAAAAGCTT
  TCCGAGCAAA CTTCATTAGA GATTAAAAAA GAAAAGAAAA GAAAGGAAAA GAAAAGAAAA
  AAGGAAAGAA AAGAGCTTCA TGCCGGGCTT TCACTTTCTT CTATTGTTGT GATTTATATA
  GTGTTGACTG TAAACACTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss39619404	mCV22769756	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss147631382	ENSMUSSNP6258830	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs29824537					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:84107808 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10337	CpG island 10337	684 bp distal
Gm58899	predicted gene, 58899	1788 bp downstream
Ptgr3	prostaglandin reductase 3	within coordinates
Rr353212	regulatory region 353212	within coordinates
Rr405764	regulatory region 405764	604 bp downstream
Tshz1	teashirt zinc finger family member 1	1977 bp upstream
Tssr152202	transcription start site region 152202	1996 bp downstream
Tssr152203	transcription start site region 152203	1505 bp downstream
Tssr152204	transcription start site region 152204	1477 bp downstream
Tssr152205	transcription start site region 152205	1440 bp downstream
Tssr152206	transcription start site region 152206	990 bp downstream
Tssr154126	transcription start site region 154126	1967 bp upstream