rs29824574 SNP Detail

Summary

• ID
  rs29824574
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:9619811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAATTCTT TGGAACATGC
  AGTTCTTTCC AGGTCATAGG CATCTGCAGT GCCTATGTAT ATTTATTTGA AAATCATCTG
  CTCCTTTTCC ATATTAATTA AAAGGACAAC TATAGGGAAG TTTGACCACT TGGTATTAAA
  TTCAAATAAG AAGGAAGAAC ATTAAATGGC ACTCCATGTG TTCACTAGAC ATGATTATGA
  M
  ACAGGTAAGA TAAAGGCACT TACGTGTAAA TTTTGAGGAA GTTTGTCTCC TATTGAACCT
  TAGTAAACTT TCCTGGCAGT TTCTCAAGTA TGACATGTAA TGTCCAGTAT AATTCACTTC
  TAGTACCTGG GTGGTTGTTG TAATTTCATT CAGTAGGCTT TTGACTTCGA CAGATGAGGG
  TGAAGTGTTC TGGTATGTAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss39619930	mCV24399107	ABI	CRAMUS_MOUSE	f	SNP	C	A	A
ss146597861	ENSMUSSNP4521918	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29824574					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:9619811 () rs orientation: forward

Symbol	Name	Function Class
Cetn1	centrin 1	342 bp upstream
Cpgi9693	CpG island 9693	227 bp distal
Gm58470	predicted gene, 58470	316 bp downstream
Tssr152399	transcription start site region 152399	377 bp upstream
Tssr152400	transcription start site region 152400	359 bp upstream
Tssr152401	transcription start site region 152401	329 bp upstream