rs29825176 SNP Detail

Summary

• ID
  rs29825176
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:103777142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACA GGAACACAAA GGAACATGAG
  Y
  AGCAAGCACT GGGCAGGTCT TCCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45866583	mCV24430480	ABI	CRAMUS_MOUSE	f	SNP		T						C
ss46631424	NES10402702	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	C	C	C	C	C	T		C	C	C	C		C
ss148947320	ENSMUSSNP4005115	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						C
ss321633161	CHEV_5_104058295	CHEVERUD	SCREENING_POP	f	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29825176					SNP	C	T	T	T	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46631424	NES10402702	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:103777142 () rs orientation: forward

Symbol	Name	Function Class
Slc10a6	solute carrier family 10 (sodium/bile acid cotransporter family), member 6	within coordinates
Tssr52162	transcription start site region 52162	7 bp upstream
Tssr52163	transcription start site region 52163	3 bp downstream