rs29825420 SNP Detail

Summary

• ID
  rs29825420
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:90375645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAAG AGCCTTCACC CACTAAGCCA
  W
  CTCAGCCAAA CTCCACTTTA ATAAG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45368592	mCV24351487	ABI	CRAMUS_MOUSE	f	SNP	T	A	T
ss320390970	CHEV_2_90385458	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29825420					SNP	T	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90375645 () rs orientation: forward

Symbol	Name	Function Class
Ptprj	protein tyrosine phosphatase receptor type J	Intron
Rr560526	regulatory region 560526	1758 bp distal
Rr560527	regulatory region 560527	1190 bp distal
Rr560528	regulatory region 560528	within coordinates
Rr560529	regulatory region 560529	1726 bp proximal
Tssr25106	transcription start site region 25106	1638 bp downstream