rs29825717 SNP Detail

Summary

• ID
  rs29825717
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164585839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAG GGGCCTCTGC ACCTAGTCCT
  M
  GACAGGGAGG AACTGGAAAG ACAAC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45368600	mCV23594260	ABI	CRAMUS_MOUSE	f	SNP	A	C	C	A
ss148231792	ENSMUSSNP1519314	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C		A
ss320606888	CHEV_2_164569419	CHEVERUD	SCREENING_POP	f	SNP					C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29825717					SNP	A	C	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164585839 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12667	CpG island 12667	1658 bp proximal
Tssr27522	transcription start site region 27522	811 bp upstream
Tssr27523	transcription start site region 27523	795 bp upstream
Tssr27524	transcription start site region 27524	772 bp upstream
Tssr27525	transcription start site region 27525	738 bp upstream
Tssr27526	transcription start site region 27526	708 bp upstream
Tssr27527	transcription start site region 27527	1977 bp downstream
Tssr27528	transcription start site region 27528	1997 bp downstream
Wfdc3	WAP four-disulfide core domain 3	within coordinates