rs29825780 SNP Detail

Summary

• ID
  rs29825780
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:151352959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGTCTACA TGTGGGCCCC
  TCAATAACTG GAACCAGGGC TGCCCCTAAA GCTGTAGCCT GACTGTGTTA TCCATTTCCC
  AATAGGGCTG ACTTGTCTGG CCTCAGTGAG AGAGGATGCG CCTAATCTGG CACAGACTTG
  ATTTGACAGG GTGGGAGGAT ATATAGGGGG ACCACATCCT CTCAGAAGAA AAAGGGCAGG
  R
  GATAGAAGGT TTTTGTAAGC AGTGGGGAGA CAAGGAGAGG GGCAGTGTTT GGAATGTAAA
  TAACTATAAA TAAAAAATTT AAAAGGTGAA ACAATAATTA AAATGTTAAG AGTCAAGCCA
  TACTTATTAT TTGTGAAGAA AGACTTTTGT GTCTCCCTTG TGGGGATGCC AGACAGAAGT
  GTATCATTCT AGTGAGCACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45866701	mCV23844876	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29825780					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:151352959 () rs orientation: forward

Symbol	Name	Function Class
D730045B01Rik	RIKEN cDNA D730045B01 gene	1284 bp upstream
Gm3704	predicted gene 3704	within coordinates
Gm42906	predicted gene 42906	1331 bp upstream
Rr378823	regulatory region 378823	23 bp upstream
Tssr54686	transcription start site region 54686	1332 bp upstream
Tssr54687	transcription start site region 54687	1307 bp upstream