rs29826334 SNP Detail

Summary

• ID
  rs29826334
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:24023768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATACTGA GTGGTCTGGT
  AAGAGGTAAG AGAAGCCTGT CCAGAGGAAA CACAGGAAGG CCTACCTCAG TCACTAAGTT
  GGTAAGTCAC TTACTTTCAT TGGGTAGCCA AAGATCTGCA CTGTCCTTGA ATACCAGCTG
  AGGGTTGCTA TACATCCCTC CTCCAACTTC AAATGTTCTC CTGCTGACAA AATAAAAACA
  Y
  GTTCATACAA TGTAAAAACC TATGTCTACA AAGGCAATGG GGAAGCAAGA GTGAGGAAGA
  CGGAAAAATG GAGGGAGAGG CAAAGGGAAG GGGGAAGGGG GAGAGAAGGG GAAGAAGATA
  ACGGAGGATG GAGAAAGAGA GGGAGAAGGG AGGGGAAAAG AGGGTCCAAG AGGGAGGGGA
  AAAGGAGGAA CATACAGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss47385324	NES11368435	PERLEGEN	MM_PANEL2	f	SNP	C	C		C	C	T		C
ss324292298	CHEV_13_23931654	CHEVERUD	SCREENING_POP	f	SNP			T				C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs29826334					SNP	C	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47385324	NES11368435	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24023768 () rs orientation: forward

Symbol	Name	Function Class
Gm56568	predicted gene, 56568	1386 bp downstream
Rr475960	regulatory region 475960	326 bp distal
Rr475961	regulatory region 475961	243 bp distal
Slc17a3	solute carrier family 17 (sodium phosphate), member 3	within coordinates
Tssr4011	transcription start site region 4011	157 bp downstream
Tssr4012	transcription start site region 4012	53 bp downstream
Tssr118875	transcription start site region 118875	343 bp downstream
Tssr118876	transcription start site region 118876	315 bp downstream
Tssr118877	transcription start site region 118877	198 bp downstream
Tssr118878	transcription start site region 118878	165 bp downstream