rs29826337 SNP Detail

Summary

• ID
  rs29826337
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:24024461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGAGACAG AGAGAAACAG
  ACAGAGAGAG AATGGTAAGG GGAAAGTCAA AGTGTCTCAT GAACAAACAT CAGTTCTTTT
  GCTAATGAGC TCAATGGCCT AGGAGAAGAG AGTCAGTGAG TTTTCTGAGG TCCATGGCCC
  TGCCTGGGTC CTGAGTCTAC AGCAGTGGTT GTAACTACTC TTGTTAGTCT GACAGCTGCT
  R
  GGGACATGAA GAACAGTGTG AGCATTGTGA AAACCACTCT AGATAAAATG GTGTTAGCAA
  TCACTTCTTT GCCTGTTACA TCATCAATAC AAAAAGCACA CAGCTCTTAC CTTACAGCAA
  ACATGACATT ATACTGGAGC CATATTTGAG AGACCATGGT CTGGGAACAG AGATTTAGGT
  TATGCCAGAT GTTCATGTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss47385327	NES11368393	PERLEGEN	MM_PANEL2	f	SNP	A	A		A	A	G
ss324292302	CHEV_13_23932347	CHEVERUD	SCREENING_POP	f	SNP			G				A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs29826337					SNP	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47385327	NES11368393	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24024461 () rs orientation: forward

Symbol	Name	Function Class
Rr475960	regulatory region 475960	1019 bp distal
Rr475961	regulatory region 475961	936 bp distal
Slc17a3	solute carrier family 17 (sodium phosphate), member 3	within coordinates
Tssr4011	transcription start site region 4011	850 bp downstream
Tssr4012	transcription start site region 4012	746 bp downstream
Tssr118875	transcription start site region 118875	1036 bp downstream
Tssr118876	transcription start site region 118876	1008 bp downstream
Tssr118877	transcription start site region 118877	891 bp downstream
Tssr118878	transcription start site region 118878	858 bp downstream