rs29826410 SNP Detail

Summary

• ID
  rs29826410
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:77869122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTCT GTGCTGTACC ATTAATGTAG
  Y
  CTGTACCACC ATTTGAATGA AGTGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39620046	mCV22975759	ABI	CRAMUS_MOUSE	f	SNP	T	T	C					C		C
ss63193994	NES17463928	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C		T	C	T	T	T	C	C	T	C
ss147555424	ENSMUSSNP1454648	ENSEMBL	ENSEMBL_Sanger	f	SNP			C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29826410					SNP	T	T	C	C	C	T	C	C	T	C	T	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63193994	NES17463928	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:77869122 () rs orientation: forward

Symbol	Name	Function Class
Atp5f1a	ATP synthase F1 subunit alpha	within coordinates
Rr541180	regulatory region 541180	1769 bp proximal
Rr541181	regulatory region 541181	1911 bp proximal
Tssr152045	transcription start site region 152045	1525 bp downstream
Tssr152046	transcription start site region 152046	1302 bp downstream
Tssr152047	transcription start site region 152047	417 bp upstream