rs29826548 SNP Detail

Summary

• ID
  rs29826548
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152354043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGAGCTC CCAAGAGGAA
  GTTGCCCTCA AACCCAGTGG GGTCACTTTC TTCTCTGTCC ATGTGCAGTG CCCTGTACAC
  ATCTAACAAG AGTCAAATGG TATGTGAGGT TGCCTCTATG CCAGACCAGT GGGTCATAGT
  ATGTAGCAAA GTGTTTGTGC TTTCTCTGGC TGTCAGTCCC AGTATGATTC CCTGTGAAAG
  R
  AGGGAGATGC AAAAAAAAAA AAAAAAAAAA AAAAAAGAAA GAAAACAAAC AAACAAACAA
  ATGCACAAAC AGAAAAACCT TTTATGCCCG GACTCAATGC ATCATTAAAT AGAAGGGATC
  AGGAATCGAA AGTCAAAATA GGAAAGCAGA TTTACTATGA TTGTCTTTTC CCATTCCACA
  TTCCCATTAA CTCTACTTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45368802	mCV23534171	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss147966721	ENSMUSSNP4632435	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29826548					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152354043 () rs orientation: forward

Symbol	Name	Function Class
Defb26	defensin beta 26	431 bp upstream
Tssr26832	transcription start site region 26832	405 bp upstream
Tssr26833	transcription start site region 26833	375 bp upstream
Tssr26834	transcription start site region 26834	332 bp upstream
Tssr26835	transcription start site region 26835	323 bp upstream