rs29826595 SNP Detail

Summary

• ID
  rs29826595
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23989220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCTGCAAA CTAGAAAAGC
  AGTCTACTAC TGAAATATAT CTCTAGGTAT TTATTATGTA GCTCAATGAA CTCATAATTG
  TCCCACCTAA GCCTCCCAAA ATATAAACAG TCTAAGTGTG CCCTGTACTG AGTTTGCTTA
  TCAGTAAAGT GTTATATAAA AACCACAGCA TGGTAAGGAG TTTGAGCTAG CTCCAAAAAC
  Y
  TTGACTTTTT TCATTGTGTG TGTAACTCAG GAATTCATTC ACTCTATAAG CTATTGTTTA
  CTTAGAGCTT ACTGTCTTCT TCTATTCAGG CTTCTGTGAA CTACCACAGA ATGCCTCTGG
  AGGGAACTCA ATTCATCAGA CACTTTGACT TTGATCCAGT GTAACGCATT TTGGTCTGGT
  GTCTTCTAGA ACTGTAAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47384935	NES11345516	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C	T	T	C		C	C	T	C		C
ss324292022	CHEV_13_23897106	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29826595					SNP	T	T	T	T	C	T	C	T	T	C	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47384935	NES11345516	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23989220 () rs orientation: forward

Symbol	Name	Function Class
Gm11337	predicted gene 11337	597 bp upstream
Rr475952	regulatory region 475952	420 bp distal
Rr475953	regulatory region 475953	1366 bp proximal
Slc17a2	solute carrier family 17 (sodium phosphate), member 2	1756 bp upstream
Tssr118868	transcription start site region 118868	1749 bp upstream
Tssr118869	transcription start site region 118869	1792 bp upstream
Tssr118870	transcription start site region 118870	1828 bp upstream
Tssr118871	transcription start site region 118871	1858 bp upstream