rs29826864 SNP Detail

Summary

• ID
  rs29826864
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:68788408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAGTTTGC ATAAGCCCTC
  ACTGACAACG CTCTCATCTG CCTTTTTTAT CTTTGCTAAT TGGATACGTT TTAAAGAGTA
  TAAGGCCCCT TAGTTTGCAT TTCTTTGATT GTAAATGATG CTTGATACTC TTTATTTCTT
  TAGATTAAAC AAAACTAGCA GTGTGGTGCA CACCGCTATT TTCCTTTCTC GGTCACCGGT
  R
  TTATTTACTC AGTCCGATGT CTGTATCCAT GTCGCTCTGT GGTAGAAGGC CTCATGTTCC
  CAGTTCAGCT TTCCTAAGGC ATGCTAGGAG ATTTAATCAG CAACTGAAAG AGACAGTGGG
  GCGCGGCGTG CCCTCCATCC AGGTCCCCGT GGACTCTTCG CTTTGAATCT GCCTGCTGCT
  TCTCTGACAG GTGTACTTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46344895	mCV24203461	ABI	CRAMUS_MOUSE	f	SNP		G	A					A		A
ss50732198	NES14251895	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	A		G	A	A	A		G	A	A	A		A
ss322996721	CHEV_9_68728933	CHEVERUD	SCREENING_POP	f	SNP													A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29826864					SNP	G	G	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50732198	NES14251895	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:68788408 () rs orientation: forward

Symbol	Name	Function Class
D9Mit158	DNA segment, Chr 9, Massachusetts Institute of Technology 158	1052 bp proximal
Rora	RAR-related orphan receptor alpha	within coordinates
Tssr85829	transcription start site region 85829	1722 bp upstream