rs29826948 SNP Detail

Summary

• ID
  rs29826948
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:36284484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTGGCGCA TGGGGGGGGG
  CATTCATTCC CCGTTGGTTG TTGATTATAG CTAGGCTGGA CTAGGTGGAG GCAGAAGTGA
  TCCGGGAATG ATGGAGGCAG TAAGTTCAGG AGACCTACAC AGGAGGAAAA GGCAGTGGCT
  GGAACAGGCG CCATGAGCTC CAGGGCTGGG ATGGTTCTCT GCATGAGAGT CCCCCAGGAT
  W
  TGAAGTAGGC TGGCCAGCAA AGCTTGTACT TTTCCTCACC GAGAGCTCAA TTTTTGTTTT
  GGTTTTTTGT TTGTTTGTTT GTTTGTTTTT CTCATCTTTT GAGATGGGGT TTTTCTGTCC
  TGAAACTTGC TCTGTAGACC TGGCTGGCCT TGAACTCCAC CTGCCTCTCT GCCTCCCAAG
  TGCTGGAATT TTAGCACCAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46884648	NES10958260	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29826948					SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46884648	NES10958260	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:36284484 () rs orientation: forward

Symbol	Name	Function Class
Rr690721	regulatory region 690721	1562 bp distal
Rr690722	regulatory region 690722	1959 bp proximal