rs29827447 SNP Detail

Summary

• ID
  rs29827447
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23989908 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGCTCAG GGAAGCTTAG
  GTATCTGTGT AGTACTCTCC AGGTTTCTGA ATTCTCTGCG CTGTCACCCA TCCTGGGCTT
  GGCTTTTGGA GTTGCAGCTC TTATAAGCAA CCCCTAACCT CTACTCCTTG TAGGTAACCG
  AAATAAAACT CAGGGGTTTT CCATGTTGTA TTTTGATGGT ATCCTTACTT TGGCCAATCA
  Y
  GTGTTCCCAA TCTGAGTGAA CAGCTTTTTG TTCATGTCTC CCCCAGAAAA TGTCACACAA
  TAGATGGCTC AGTGGTTTAA AGGGCATTCT GTTCTGGAGT ACTGAGGTTA GTTTCCTGAA
  CCTTCTCAAG AGAGGAGTCA CAGGTACCTG TAACTCCAGT TCCAGGGTTT GGGGGGCTCC
  TTAGGTACCC ACATGCATGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47384947	NES11345525	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29827447					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47384947	NES11345525	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23989908 () rs orientation: forward

Symbol	Name	Function Class
Gm11337	predicted gene 11337	1285 bp upstream
Rr475952	regulatory region 475952	1108 bp distal
Rr475953	regulatory region 475953	678 bp proximal
Slc17a2	solute carrier family 17 (sodium phosphate), member 2	1068 bp upstream
Tssr118868	transcription start site region 118868	1061 bp upstream
Tssr118869	transcription start site region 118869	1104 bp upstream
Tssr118870	transcription start site region 118870	1140 bp upstream
Tssr118871	transcription start site region 118871	1170 bp upstream