rs29827450 SNP Detail

Summary

• ID
  rs29827450
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23990327 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACACATAAA TAAAAATAAG
  AAAACTAATA TAGTTTGGAT TTTTTAAATA ATAATAATAA AAAGAAAATG AGTAGGGACC
  AGTAAGACTG GCTAAGGAGC TGGGCAGTAT AGGCTCTTTG GGGGACCATG ATGATAGGAC
  TGGGGTCAGA GGCTCAGCTG GTGCTGAAAC GCAGAGAAGG CAGGTCTTCA CCTTGTTTTA
  R
  GAAGGCCAAG AGACTAACTA GAAAGATCTA TCACCAGCCA CATTCCAAAA CCTAAAAGCC
  ACAAAACAAA CCCAAGAGTC AGGAGTCAAG CAAAACCACA TCAGGAGGAC CCAGAGAAAA
  TGGAGGTCGG GAACAGGGGA ATTCTCAGTC ACAGTTCACA TCTGTTCACT GTGGACACCA
  GAGGACGGAA GGCAGTCTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47384950	NES11345526	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	G	A	A	G		G	G	A		A
ss324292026	CHEV_13_23898213	CHEVERUD	SCREENING_POP	f	SNP											A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29827450					SNP	A	A	A	A	G	A	G	A	A	G	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47384950	NES11345526	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23990327 () rs orientation: forward

Symbol	Name	Function Class
Gm11337	predicted gene 11337	1704 bp upstream
Rr475952	regulatory region 475952	1527 bp distal
Rr475953	regulatory region 475953	259 bp proximal
Slc17a2	solute carrier family 17 (sodium phosphate), member 2	649 bp upstream
Tssr118868	transcription start site region 118868	642 bp upstream
Tssr118869	transcription start site region 118869	685 bp upstream
Tssr118870	transcription start site region 118870	721 bp upstream
Tssr118871	transcription start site region 118871	751 bp upstream