rs29827453 SNP Detail

Summary

• ID
  rs29827453
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23990576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCTAAAAG CCACAAAACA
  AACCCAAGAG TCAGGAGTCA AGCAAAACCA CATCAGGAGG ACCCAGAGAA AATGGAGGTC
  GGGAACAGGG GAATTCTCAG TCACAGTTCA CATCTGTTCA CTGTGGACAC CAGAGGACGG
  AAGGCAGTCT AGCTGATTGA CTGGATCCCT CTGCAGGACC ATCTCGTTCA GGCATATAGA
  Y
  GTTAGCAGAT AGACGTCATT TCATTCGTCC CATCAATCTC TGGGCATTGC GCCCATTTCA
  ACCCTGTTTC TTCATGTAGA AGCCAGTTCT AGCAGGCGGG GTGCTTTGTC TGCAGACGAA
  GAAAGCTCTA GGAGCAAAGG TGGGGATGAC TTCAGAGATT CAGGCTAAGG AGCCCCACTG
  CTGCTTGCAT TCCACACCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47384953	NES11345527	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C	T	T	C		C	C	T	C		C
ss324292027	CHEV_13_23898462	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29827453					SNP	T	T	T	T	C	T	C	T	T	C	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47384953	NES11345527	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23990576 () rs orientation: forward

Symbol	Name	Function Class
Gm11337	predicted gene 11337	1953 bp upstream
Rr475952	regulatory region 475952	1776 bp distal
Rr475953	regulatory region 475953	10 bp proximal
Slc17a2	solute carrier family 17 (sodium phosphate), member 2	400 bp upstream
Tssr118868	transcription start site region 118868	393 bp upstream
Tssr118869	transcription start site region 118869	436 bp upstream
Tssr118870	transcription start site region 118870	472 bp upstream
Tssr118871	transcription start site region 118871	502 bp upstream