rs29827613 SNP Detail

Summary

• ID
  rs29827613
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:110014007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGTCTATA TATGTTTATA
  TGTATTTTAC TAGTTCTATC TCTACATATA TGACATATGT CTGTATATAG ATGTCTCTCT
  GTCTATATGT AATTATCTAG TTCTCTATCT TATATATATG TATATATATT CTTTCTCTAT
  AAATAGATAA TTTATGTATA TAGAGAGAGC TAGCTAGCAA AGTAATGTTA TAATCATATA
  Y
  GCAAAAAGAT AGACTGGAAA AGAAAATATA TATTATTCAT TTGTAAACAT TAATAACTCA
  GGTACTAGCA TATAAAAGTA ATGAGGCACA ATATGTTGAT TCAAAATATA GAAAATGTCA
  TATATATGTG TGTATATATG TATCATATTG ACTAAACCTA ATCAGACTAA TTGATCCAAT
  CTCACATTAT ACTAAGGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46884863	NES10703525	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29827613					SNP	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46884863	NES10703525	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:110014007 () rs orientation: forward

Symbol	Name	Function Class
Ntng1	netrin G1	within coordinates