rs29827745 SNP Detail

Summary

• ID
  rs29827745
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:97447730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAGAGGTC ATAGATCTTA
  CTAAATGATT GCTTCCTTAT AAATTCCCAA ACAAGAAATC TTCTCTGAGA AATGCTGTAG
  GATTGCCGCC ATTTGTCACT CGGCCCATGC ATGCTTAATC ACCTGCATTT CCAGGCCACT
  AAAGGCACAT TCCGTGCATT GTGGAGGCCT GGGATAGTTA ATACAAGCAT TGAAAACCAA
  M
  CACAGTTCCC CAGGGCACTT AAGCACTGGG ATGGAATTCT GCTATTGTGT TCTGAGTCAA
  TAGGTCCCTA TTGTCTTGAT CGATTCCAAT AAAAGTTAAT TTATTGCTAG GAAAAGTAGG
  ATTTAAAAGA TGGCTTACTT CTCATTTATG TTTACATCCT TGGAATTCAT CTTTAAATTA
  GAAATTTTTA TATAGGATTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45866716	mCV23871585	ABI	CRAMUS_MOUSE	f	SNP		A	C					C		C
ss46614625	NES10418777	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	C	C	C		A	C	C	C		C	C	C	A		A
ss148892030	ENSMUSSNP7040820	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C							C
ss321620822	CHEV_5_97728890	CHEVERUD	SCREENING_POP	f	SNP													C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29827745					SNP	A	A	C	C	C	C	C	C	A	C	C	C	C	C	C	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46614625	NES10418777	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:97447730 () rs orientation: forward

Symbol	Name	Function Class
Gm72500	predicted gene, 72500	within coordinates
Rr615043	regulatory region 615043	309 bp proximal
Rr615044	regulatory region 615044	954 bp proximal
Rr615045	regulatory region 615045	1299 bp proximal