rs29828254 SNP Detail

Summary

• ID
  rs29828254
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:106767768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCTG CCCAGATCTA GCTGTCCCAG
  K
  CCCGAGGCAC TTGATATATG CTCAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46344406	mCV22323033	ABI	CRAMUS_MOUSE	f	SNP	T	G	G
ss136941094	ENSMUSSNP4557352	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		G
ss323187629	CHEV_9_106792900	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29828254					SNP	T	G	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106767768 () rs orientation: forward

Symbol	Name	Function Class
4930524O07Rik	RIKEN cDNA 4930524O07 gene	942 bp upstream
Cpgi22278	CpG island 22278	795 bp proximal
Manf	mesencephalic astrocyte-derived neurotrophic factor	Intron
Rr368849	regulatory region 368849	1331 bp upstream
Rr686409	regulatory region 686409	658 bp proximal
Rr686410	regulatory region 686410	836 bp proximal
Rr686411	regulatory region 686411	1218 bp proximal
Rr686412	regulatory region 686412	1386 bp proximal
Rr686413	regulatory region 686413	1400 bp proximal
Rr686414	regulatory region 686414	1656 bp proximal
Tssr86942	transcription start site region 86942	358 bp downstream
Tssr86943	transcription start site region 86943	1545 bp upstream
Tssr86944	transcription start site region 86944	1881 bp upstream
Tssr86945	transcription start site region 86945	1907 bp upstream
Tssr91353	transcription start site region 91353	797 bp downstream
Tssr91354	transcription start site region 91354	811 bp downstream
Tssr91355	transcription start site region 91355	825 bp downstream
Tssr91356	transcription start site region 91356	832 bp downstream
Tssr91357	transcription start site region 91357	1339 bp downstream
Tssr91358	transcription start site region 91358	1362 bp downstream
Tssr91359	transcription start site region 91359	1396 bp downstream