rs29828376 SNP Detail

Summary

• ID
  rs29828376
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23990851 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAGAAGCC AGTTCTAGCA
  GGCGGGGTGC TTTGTCTGCA GACGAAGAAA GCTCTAGGAG CAAAGGTGGG GATGACTTCA
  GAGATTCAGG CTAAGGAGCC CCACTGCTGC TTGCATTCCA CACCTCTTTC CACTTTCAGC
  GAAGTGGCTT GTTGACTGAA TGTCTGTGTG CATAGTTCAA AGCAGAAAAA CATAGTGACA
  Y
  CGTTGAGATA CTCACTAGGT CGGTGAGAAC TTGAAAGTGA AGTTAAAAAT TAAGCAGCCA
  CGCCAAATGC AGATTCTCTG TCCCAAGAGC ACAGGGTCAA ACCTGGCGGT GTTTGTTCCC
  ACGTGACTCA TTACGTTTCT CTGCAAAGAG AGGAAGATAC AGGAACACCT TTTTTCAAGG
  TAGCTTTCTA GTCTAGAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47384956	NES11345528	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	T	C	C	T		T	T	C	T		T
ss324292029	CHEV_13_23898737	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29828376					SNP	C	C	C	C	T	C	T	C	C	T	C	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47384956	NES11345528	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23990851 () rs orientation: forward

Symbol	Name	Function Class
Rr475953	regulatory region 475953	within coordinates
Slc17a2	solute carrier family 17 (sodium phosphate), member 2	125 bp upstream
Tssr118868	transcription start site region 118868	118 bp upstream
Tssr118869	transcription start site region 118869	161 bp upstream
Tssr118870	transcription start site region 118870	197 bp upstream
Tssr118871	transcription start site region 118871	227 bp upstream