rs29828382 SNP Detail

Summary

• ID
  rs29828382
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23991062 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACTAGGT CGGTGAGAAC
  TTGAAAGTGA AGTTAAAAAT TAAGCAGCCA CGCCAAATGC AGATTCTCTG TCCCAAGAGC
  ACAGGGTCAA ACCTGGCGGT GTTTGTTCCC ACGTGACTCA TTACGTTTCT CTGCAAAGAG
  AGGAAGATAC AGGAACACCT TTTTTCAAGG TAGCTTTCTA GTCTAGAGCT TTAAATACTA
  S
  TTTAATGGTG ATGGTAAGTG TTTTTCTTCT TGTAAATAGG ATGTTAATTA TGAAGCTATC
  AGAGATGCCT TCAAGGGAGG AAGTAATGTT AAGAGAACTC AAAAACACAC CAACTGCTGT
  GTGAGGACCT CCATTGGGAA TGGTGTCTGG CTCTGGAGAA GAGGCTTTCT TACAAAATAA
  CAATCCAATC AAGACTCTAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47384962	NES11345531	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	G	C	G	C	C	G		G	G	C		C
ss324292031	CHEV_13_23898948	CHEVERUD	SCREENING_POP	f	SNP											C				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29828382					SNP	C	C	C	C	G	C	G	C	C	G	C	G	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47384962	NES11345531	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23991062 () rs orientation: forward

Symbol	Name	Function Class
Rr475953	regulatory region 475953	21 bp distal
Slc17a2	solute carrier family 17 (sodium phosphate), member 2	within coordinates
Tssr118868	transcription start site region 118868	67 bp downstream
Tssr118869	transcription start site region 118869	16 bp downstream
Tssr118870	transcription start site region 118870	2 bp downstream
Tssr118871	transcription start site region 118871	16 bp upstream