rs29828889 SNP Detail

Summary

• ID
  rs29828889
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:77185974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAGGTACC TTCTACCAAG
  AAAAGGAGAA GTAGAAGGAA AGGAAAGGAA AGAAAAGGAA AAGGAGAAGG GAGAGGAGGA
  GTGGAGGGAG GGAAAGAACT TGGTTTAAGG AAGGACAAGG GAGAAAAGCA GAAACTTATC
  TCTCTATTTT ATAATCTAAA TTCACAACTA TATGAAGAAG TTAGGTTTAC ATTTTGAAAC
  Y
  TATTTCAAGA CTTTCTGATT ATAATCATGC TACATTTAAA GACGCAAGCT ACTCCTACTT
  AAAATATAGA AAAGAAAAAT TTAGATGTAC AATCTTTTAA TTTAATCTTA TGTACTTAAG
  TCTTTGCAGT TACGAAAATT ATATAAATAT AAAATAATAC AAATTTGAAA TCTAAAAAAA
  TATTATAGTT TAATGCAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46344922	mCV22299536	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss136655344	ENSMUSSNP4392929	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
ss323012064	CHEV_9_77126499	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29828889					SNP	C	T	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77185974 () rs orientation: forward

Symbol	Name	Function Class
Gm53504	predicted gene, 53504	within coordinates
Mlip	muscular LMNA-interacting protein	within coordinates
Rr683300	regulatory region 683300	1531 bp distal