rs29829228 SNP Detail

Summary

• ID
  rs29829228
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23991198 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAGGAAG ATACAGGAAC
  ACCTTTTTTC AAGGTAGCTT TCTAGTCTAG AGCTTTAAAT ACTACTTTAA TGGTGATGGT
  AAGTGTTTTT CTTCTTGTAA ATAGGATGTT AATTATGAAG CTATCAGAGA TGCCTTCAAG
  GGAGGAAGTA ATGTTAAGAG AACTCAAAAA CACACCAACT GCTGTGTGAG GACCTCCATT
  R
  GGAATGGTGT CTGGCTCTGG AGAAGAGGCT TTCTTACAAA ATAACAATCC AATCAAGACT
  CTAAGGTTTG CGAGGCCACT GGTGTCAAGG GCCACTGTGG ATCGTGGTCA CTAGCCGGAG
  GAGTATCACA CTATCGGTGA GTATTGGCTG TGGTATGTAG ATGTGTACAA CTGGCTTTGG
  ATGAAACACT GAACCAGAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47384968	NES11345534	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A		A	A	G		G
ss324292033	CHEV_13_23899084	CHEVERUD	SCREENING_POP	f	SNP										G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29829228					SNP	G	G	G	G	G	G	G	G	A	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47384968	NES11345534	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23991198 () rs orientation: forward

Symbol	Name	Function Class
Rr475953	regulatory region 475953	157 bp distal
Slc17a2	solute carrier family 17 (sodium phosphate), member 2	within coordinates
Tssr118868	transcription start site region 118868	203 bp downstream
Tssr118869	transcription start site region 118869	152 bp downstream
Tssr118870	transcription start site region 118870	138 bp downstream
Tssr118871	transcription start site region 118871	113 bp downstream