rs29829788 SNP Detail

Summary

• ID
  rs29829788
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:36288108 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGCTCACC CTCATGCTCT
  TGTCCATAAC CCCTCACCCA CGTTCTATGA GTGAGCCAAA TAGACCCATT GGTTCCTAAA
  GAGAAATTTT GTGGAATGGA ACTTTAGTTT GCCGTTGGAA TCTTAGAAGG AAGGAGAAAA
  GAGGTAGAGC TTGCCTAGCT GTTTCTCCTA CTGGGAGAAA ATTCTAAAGA CAGTGGTGCC
  R
  GGAGAGACAG CATCCACTGG CAAGGGCTGC CCTGAAAAGA ATTAGGACTG TCTGTCCAGG
  TGCTGGCAGA GTAGACAAAC GCAGAGGGTG GAGCATGGCC AAGCACAGCA GCTGTCTGCT
  TGAACCTCTG TCAGGGTGGC AGCTAAAGCT TCTGATGGAG ACTAGTGGGG CTGAGTGGCA
  GGAATGGGTA GGAGGGCAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46884678	NES10958111	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29829788					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46884678	NES10958111	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:36288108 () rs orientation: forward

Symbol	Name	Function Class
Rr690722	regulatory region 690722	1465 bp distal
Rr690723	regulatory region 690723	1551 bp distal