rs29830371 SNP Detail

Summary

• ID
  rs29830371
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:66271945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ACCAAAAAAA AAAAAATCTG TGAAGTGCTC AATACTTTAG ACACATTTTA ATAAACAAGA
  TGATAGTAAA ATTACTCTTC TCCATCAAAT TGAGACTGTG CTGGGTTAAA CTGTTTTAAT
  GCATTTTAAC TCCTGATGTT CATCCAAGTA ATAAGAGCAG GTACACATCT TTGTGGTTTG
  CAGATAAATA TCAGATGTGA TAATTGTACT GTCTGTACTG AGAAAAGAGG TTCTGAGCTT
  TCTCCTTAGA TTTTGCATAT AGTGAACCAT TCTTTTAGAC TTTCAAAACA ATCTCTATAG
  R
  AATTGTTTTA TTCTATTTTA TTTTATTTTG TTTTATTTTA TTTTATTTTA AAAAGATGGT
  CATTCTTAGA TTCACTTCTT GATACCAAGG GGAATATTTT AAGCAGCAGA TTAAAAAATA
  TTAAACTGCC TAATTAACAA TCAATTATCT CAAGTGTATG TAACATGAGC TACAGTCTTA
  AAACCTACAA ACAGTACATC CAGTCTCCTA CCATGATTCT GAGTGTGATG ATTTCATATG
  AGCACAAGAT GACATCATAC TATTTAGTTA TATGTAAAAT CATGGTCTTA CATGGGTTGT
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45368457	mCV23089887	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss146716943	ENSMUSSNP5835020	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29830371					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:66271945 () rs orientation: forward

Symbol	Name	Function Class
Gm13629	predicted gene 13629	within coordinates
Rr558183	regulatory region 558183	702 bp distal
Scn1a	sodium channel, voltage-gated, type I, alpha	764 bp upstream
Tssr18000	transcription start site region 18000	696 bp downstream
Tssr18001	transcription start site region 18001	672 bp downstream
Tssr24381	transcription start site region 24381	755 bp upstream
Tssr24382	transcription start site region 24382	696 bp upstream
Tssr24383	transcription start site region 24383	439 bp upstream