rs29830497 SNP Detail

Summary

• ID
  rs29830497
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:103571332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TCTTAAATGT GTCATATCAC TTGTAAGATG GTTCATGGTC CTGTTTATTA GTATTTTCTT
  TCTTTGTTTA AAAAACTACA AACTACAGTA TGTTCAAACA GATTAGCTTG TAGGTTTCTC
  TTTTGTGTTT CTGGTTTTAT TTTTAAGCGA GCCATTCAGC TTCTCCCAAA CAGGGGATTA
  CTATAGAAAG AAGCCCGAGG GCAGCCACCT GAAGTGGCTT CATGCAAAAG AAAAGAAATG
  GCTCACAACA GTATAGCTTA TCTTTTTTTT TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT
  K
  TGGAAGTTTA CAGCCACCAT TCTCTCTGTA CTGTTTCTAC CTTCTTTCTG ACAGATCACA
  AGCCATTGCA AGCTTTATGG ATGGTTTCTT TCCTTCAAAT AACTGTATCA ATTTTCTTTC
  AGTGGCAAGC AGGCAAGTAT TCCGTTTTTG TTCCTCTAAA CAGGCCTCTC CCTATCTTAC
  CTCCCTGATA AATGAGCCGG AACTTTCAAA ACTGGGGGAA GGGCTACAAG TCTTCTCTGT
  CTCCACTCCC ACAGGCCGGC CCTGCTCACT GTTGTTTTCT GACCTCCTGC TGCTCTCTAG
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45866748	mCV24430836	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs29830497					SNP	G	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:103571332 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16135	CpG island 16135	1180 bp proximal
Ptpn13	protein tyrosine phosphatase, non-receptor type 13	1726 bp upstream
Rr615857	regulatory region 615857	within coordinates
Rr615858	regulatory region 615858	1545 bp proximal
Tssr47557	transcription start site region 47557	1715 bp upstream
Tssr47558	transcription start site region 47558	1736 bp upstream
Tssr47559	transcription start site region 47559	1767 bp upstream