rs29831098 SNP Detail

Summary

• ID
  rs29831098
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23991663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCTCAAG ATGAGGAGAC
  TGGCAGAAGC CAGATTAAGA TGAAAATCAA GACAACTGAC TATTTCTGGA AGGCTTTCTG
  CCTTTGTACA GTTAAGAGGA GACCATGGTA GGTGCCTGTA ATGACTGGTA GCCATAGAGG
  ACAGGATTTA GTGAGGATGG GTTTCTCTCT TGTCCTAGCG GAATTGCAGA AAGCTACACC
  Y
  GTGCAATTGG CTTTTTGGCA TAACTCTGTC AAGAATTTTC CCCTTGGGGT CTTTAAACAT
  TTTTTTAGAC TGTGATTTAA CTTATAAATA CATTGGTTGA GGGACCTCTC AGTTCCTCAG
  AAAAGTAGAG AGGTAATGAG TTGCCTAGCA CTCAAGGGAT ATTTTTACCC TCATGTTCTT
  TTCAGTCTGT GGCGAGATGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47384989	NES11345544	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C	T	T	C		C	C	T	T		T
ss324292039	CHEV_13_23899549	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29831098					SNP	T	T	T	T	C	T	C	T	T	C	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47384989	NES11345544	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23991663 () rs orientation: forward

Symbol	Name	Function Class
Rr475953	regulatory region 475953	622 bp distal
Slc17a2	solute carrier family 17 (sodium phosphate), member 2	within coordinates
Tssr118868	transcription start site region 118868	668 bp downstream
Tssr118869	transcription start site region 118869	617 bp downstream
Tssr118870	transcription start site region 118870	603 bp downstream
Tssr118871	transcription start site region 118871	578 bp downstream