rs29831630 SNP Detail

Summary

• ID
  rs29831630
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:36914285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCACCCAAG TTCAAGTAAG
  TTCAAGTTTA CAAGTTGCTC ACATATGTTG CAGAGGTGCT AGGGCTACAA GGAGGGTTGG
  AGTGGACACA GCCAACCCAG AACCACTAAG GAAGACAGAG TAGGGTTGTG CAAGCTCAGT
  ATGAGGCAGA CAAAGCAACA AGGGAGGAGA TGGACCAGGC TTGCAGCTAG TGTCAGCAGG
  Y
  CAGCGGGCCC ACCAAGTCCT AAAGGAAAGC ACACACACAC AGCACTCTTG TTCCCTAATA
  GAGCCGGGCT TCTAGAGCAG CTAATCCTGA GAGGAAGTAA AGAGAGTTCT AAGAGAGCCC
  CCCTTCCCTG TTTCCTGAAG GCCCTCACCG CCCCTCAGGG AGGCACAGAG AAAAGGATTC
  ACAATCACAG CTGCTTCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46885590	NES10954255	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29831630					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46885590	NES10954255	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:36914285 () rs orientation: forward

Symbol	Name	Function Class
Rhox6	reproductive homeobox 6	1647 bp upstream
Tssr160770	transcription start site region 160770	1547 bp upstream
Tssr160771	transcription start site region 160771	1599 bp upstream
Tssr160772	transcription start site region 160772	1605 bp upstream
Tssr160773	transcription start site region 160773	1636 bp upstream
Tssr160774	transcription start site region 160774	1953 bp upstream