rs29831980 SNP Detail

Summary

• ID
  rs29831980
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23992066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTTCTCGT CCAAGGCAGA
  ACACACTTTA AAATAGAAGT TTAAAACAGA ACATTTTATT AAAATATTTT TATTTGCTCT
  GTGCCTGCAT TTGCTCATGA ATCTGAGAAG TTCTAACATG GAGTGAGTGG GGGCATGGTG
  GCTGTCACTG CTGCTGTTAA TGGCAGTGAC ATTTGACAAT GTAGAACTCC TTGGAGGAGC
  R
  CACCTCGGAC TTCTCCTCAT GCAAACAGTC CCATGAAGTA ATATTGTCCT CTCTTTTCCT
  CTGAAACAAT TAAGGCGCTA AGAGTTTATG AAACTTGCTA TGGTTTGTAC AGAGTGGAAA
  TTGAGACTCT GAACTTCTGG CTCCTGATAT TTGAACAATA TGCAACATTT GCTTTGTTTA
  AATCAGGAGG CTGGGCTGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47385001	NES11345548	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29831980					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47385001	NES11345548	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23992066 () rs orientation: forward

Symbol	Name	Function Class
Rr475953	regulatory region 475953	1025 bp distal
Slc17a2	solute carrier family 17 (sodium phosphate), member 2	within coordinates
Tssr118868	transcription start site region 118868	1071 bp downstream
Tssr118869	transcription start site region 118869	1020 bp downstream
Tssr118870	transcription start site region 118870	1006 bp downstream
Tssr118871	transcription start site region 118871	981 bp downstream