rs29832316 SNP Detail

Summary

• ID
  rs29832316
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:61927391 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCATTTAGA GCCCTACTCT
  GGGGTCTCTA AAATTGGTTT GGAATTTGGA AATTCCAAAT TTGGATTTGA AGGCAGCTCA
  TCATGGTATA TGTAAGTGGG TTTTTGTCAT GGTGTAGTCA AAATTCTTAG TGTTGTGAAA
  TAACGCAGAT CCTCGTTCTA CACAGGGCAT GACTGGAGTG GGTATAATTC TGCGATATTG
  Y
  TATTAATTAA AAAAAGTTAA AATCTTCTAT ACAGAGGTAT TTTGCATGTA TGATGTCTCT
  GCACCACCTG TGTGCCTGGT GCCCAGGGAG GCTAGAAGAA AGTGCTGGCT CTACTGGGAC
  TTAAATTATA GCTGCCTGTG AGCTACTTTG CATGCAGATG CTGGGAACTG AACCTGGGTC
  CTCTGCAGGA GGAGCGAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss39620104	mCV24036994	ABI	CRAMUS_MOUSE	f	SNP	T	T	T					C	C
ss50425666	NES13465443	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	T	C		C	C	T	C	C	C
ss147260915	ENSMUSSNP614505	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs29832316					SNP	T	T	T	C	T	T	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50425666	NES13465443	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:61927391 () rs orientation: forward

Symbol	Name	Function Class
Gm35919	predicted gene, 35919	533 bp downstream
Rr346544	regulatory region 346544	1191 bp distal
Rr346545	regulatory region 346545	within coordinates
Rr351728	regulatory region 351728	1246 bp distal
Rr354902	regulatory region 354902	1991 bp distal
Rr356351	regulatory region 356351	183 bp distal