rs29832379 SNP Detail

Summary

• ID
  rs29832379
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:36915395 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTGGATGAT GGTGGGATTG AGCCCTGTTG GGGACACAGT
  CTCTCAGGAG GATGTCGCCC TGGCAGTTCC CGAATATTTG CCACCACACA GGGCTACTCA
  R
  GGCAGCACAA CCAAAGAAGG GGCAGTGAAG AGTGTGTGCA TCCGGGCAAA CCATGATGTG
  GGCCAGACGT GACAGAGTTC AATTGGTACC ACTTTATTAA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46885599	NES10954212	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29832379					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46885599	NES10954212	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:36915395 () rs orientation: forward

Symbol	Name	Function Class
Rhox6	reproductive homeobox 6	537 bp upstream
Tssr160770	transcription start site region 160770	437 bp upstream
Tssr160771	transcription start site region 160771	489 bp upstream
Tssr160772	transcription start site region 160772	495 bp upstream
Tssr160773	transcription start site region 160773	526 bp upstream
Tssr160774	transcription start site region 160774	843 bp upstream