rs29833375 SNP Detail

Summary

• ID
  rs29833375
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:36915622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGAGTGTG TGCATCCGGG
  CAAACCATGA TGTGGGCCAG ACGTGACAGA GTTCAATTGG TACCACTTTA TTAACGGGTA
  TGCCTTTGCC ATTTGCTTTG AAGGCAATTT GCATAATTTA ATAAAATTAT TCAACAGGGC
  TCAAAGGCCT GCTGAGCTTG AGGAGGTCTT TGTGTTACTC CTTGTGAAGG AATTTGAACC
  R
  TTCAGGCTTA ACCAGGGCTA CAGGTGTCCC CCAAGCAGCA CCTTAGAGCC AGGAGTTCTG
  CACCCGTACA CGCCCAGTTG CTGCATTCCT TTTGAAAAGG ACTCTGCTCT TTGGAGCTCT
  GAACTGCTTC TGCCTGTGCG CCTCAGGGAA GAAGCCCACA GCCACTGCGA CTGTGCGAGA
  AGTCAGGACA GACCGCCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46885605	NES10954214	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29833375					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46885605	NES10954214	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:36915622 () rs orientation: forward

Symbol	Name	Function Class
Rhox6	reproductive homeobox 6	310 bp upstream
Tssr160770	transcription start site region 160770	210 bp upstream
Tssr160771	transcription start site region 160771	262 bp upstream
Tssr160772	transcription start site region 160772	268 bp upstream
Tssr160773	transcription start site region 160773	299 bp upstream
Tssr160774	transcription start site region 160774	616 bp upstream