rs29833381 SNP Detail

Summary

• ID
  rs29833381
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:36916054 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCGGATCCAG AGATTCTCGC TATGGAAACT CCTCAAGACA
  GCCGCCAAAG CATCCAAAAG CCTCCGAGTC CGGCAGCCGA GGAGGACAAG GAAGAACAGC
  M
  TGGTGAGTAA ACTGGTTCTG ACTGGACTTG GGTGAAGTTT GGGGAGAAAC GGTGGGTGGA
  AAGAAGAGTG GACAGGCACT TCAGGTCGGT TACAGAGCCC                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	C3H/HeJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46885611	NES10954216	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	C3H/HeJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29833381					SNP	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46885611	NES10954216	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:36916054 () rs orientation: forward

Symbol	Name	Function Class
Rhox6	reproductive homeobox 6	within coordinates
Tssr160770	transcription start site region 160770	215 bp downstream
Tssr160771	transcription start site region 160771	167 bp downstream
Tssr160772	transcription start site region 160772	158 bp downstream
Tssr160773	transcription start site region 160773	130 bp downstream
Tssr160774	transcription start site region 160774	184 bp upstream