rs29833860 SNP Detail

Summary

• ID
  rs29833860
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:64696676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAAA ATGCCAATAG GTTCACGTGG
  Y
  TATACCAAAG CAACCCAAAG ACCGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46344474	mCV25282057	ABI	CRAMUS_MOUSE	f	SNP		T	C			T	T
ss47722464	NES11315933	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T		T	T		C	C	T		T
ss136565248	ENSMUSSNP3745255	ENSEMBL	ENSEMBL_Sanger	f	SNP			C				T
ss322985860	CHEV_9_64637201	CHEVERUD	SCREENING_POP	f	SNP									C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29833860					SNP	T	T	C	T	T	T	T	T	C	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47722464	NES11315933	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:64696676 () rs orientation: forward

Symbol	Name	Function Class
Rr401455	regulatory region 401455	37 bp upstream
Rr681316	regulatory region 681316	within coordinates
Rr681317	regulatory region 681317	1301 bp proximal
Rr681318	regulatory region 681318	1870 bp proximal
Tssr2909	transcription start site region 2909	1400 bp downstream
Tssr85622	transcription start site region 85622	255 bp upstream
Tssr85623	transcription start site region 85623	269 bp upstream
Tssr85624	transcription start site region 85624	1562 bp upstream
Tssr90157	transcription start site region 90157	1428 bp downstream