rs29834240 SNP Detail

Summary

• ID
  rs29834240
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:36917331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCTAAAGC TAGGTTTAAG
  GTAAATGTTA AGAATAGTGA CTGTAAGTAA ATGTGTATGA GCACACAAGT GTGGGCCCAA
  ACATATAAAA CCAAATCGGA CATGTCCTTA CACAATTGAT TTCCACCAGA AAGGCTAAAT
  GTTGGAACTT TTTCTCTTTA GGAGGGATCT TGCACGATGG ATGGGTGTGG ATGAATGTGA
  Y
  GTGCAGGTAA GTGTTCTGAA AACACAAAAC ATACAGTTTT TGGAAGGGTG CCACACCCAG
  TGATGTTGCC CTCCGGAAGT ACAACAGCAG AACAGGACCC TGAAGTTCCC TCCAAAGGCT
  GCTAGACCAG TACACAGCCA GGCTAGGTTC AAGATGACGC CAGGCCTCCA TTTTTACAGG
  CAGGAAATGC CAACGGAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46885620	NES10954219	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29834240					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46885620	NES10954219	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:36917331 () rs orientation: forward

Symbol	Name	Function Class
Rhox6	reproductive homeobox 6	within coordinates
Tssr160770	transcription start site region 160770	1492 bp downstream
Tssr160771	transcription start site region 160771	1444 bp downstream
Tssr160772	transcription start site region 160772	1435 bp downstream
Tssr160773	transcription start site region 160773	1407 bp downstream
Tssr160774	transcription start site region 160774	1029 bp downstream