rs29834367 SNP Detail

Summary

• ID
  rs29834367
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108685480 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCCC GCCAAACCTC TCTCGGCCGC
  R
  AGGGGGCGCG GCGCTCCAAT ACTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46344283	mCV25034493	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	A
ss136953274	ENSMUSSNP5344105	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
ss323192891	CHEV_9_108710612	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29834367					SNP	G	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108685480 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22353	CpG island 22353	within coordinates
Ip6k2	inositol hexaphosphate kinase 2	1944 bp downstream
Nckipsd	NCK interacting protein with SH3 domain	87 bp upstream
Rr192618	regulatory region 192618	280 bp distal
Rr205762	regulatory region 205762	within coordinates
Tssr87162	transcription start site region 87162	59 bp upstream
Tssr87163	transcription start site region 87163	75 bp upstream