rs29834400 SNP Detail

Summary

• ID
  rs29834400
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:24021695 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTAAATTT CAGATGTGTA
  TATGAGCTGT GTCTGTACTT CTTTCTCTTA CAGACAGTGA AAGATTGTAT ACTATGGAGA
  TCGTATACTA CATATGCTTC AGAAAATCCT CATTCCCCAA GGCCCAGACT TCTCAAATTA
  TTAACCTCAA TGACACATCC AACAGCTCCA GTCAGGAGCT TCAGTCAGGG CTTCCCATTA
  Y
  GGAGAAGTGG TTTGTCCTCT TACAGCACTT AGAGTCAAAC ACAAAACCAA AGGAGATGCA
  TTGAGAGCAT AAAGCAAGAC AGGACTTAAA GCCACAGTGA AGATGAGCTA CCAGAAGAGC
  TCAGTGCACA CAGAACCCAG ATTCCTTTCT GTGAATGAGT TTGACATCAG TGCTCAGGCT
  GAGTCATAAG CCTAGGGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss47385321	NES11368481	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs29834400					SNP	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47385321	NES11368481	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24021695 () rs orientation: forward

Symbol	Name	Function Class
Gm56568	predicted gene, 56568	within coordinates
Rr475959	regulatory region 475959	798 bp distal
Rr475960	regulatory region 475960	1726 bp proximal
Rr475961	regulatory region 475961	1809 bp proximal
Slc17a3	solute carrier family 17 (sodium phosphate), member 3	1722 bp upstream
Tssr4011	transcription start site region 4011	1913 bp upstream
Tssr118873	transcription start site region 118873	802 bp downstream
Tssr118874	transcription start site region 118874	751 bp downstream
Tssr118875	transcription start site region 118875	1689 bp upstream
Tssr118876	transcription start site region 118876	1733 bp upstream
Tssr118877	transcription start site region 118877	1865 bp upstream
Tssr118878	transcription start site region 118878	1886 bp upstream