rs29835318 SNP Detail

Summary

• ID
  rs29835318
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:57171125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGAG GGGCTGGGCT CCAGGTAGGA
  Y
  TAGGAAGAGG AAGTGAGGTC ACTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46345100	mCV23499332	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss136517951	ENSMUSSNP1946726	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss322971867	CHEV_9_57111649	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29835318					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:57171125 () rs orientation: forward

Symbol	Name	Function Class
1700017B05Rik	RIKEN cDNA 1700017B05 gene	1230 bp upstream
Cpgi21813	CpG island 21813	940 bp distal
Gm68485	predicted gene, 68485	1422 bp downstream
Gm68491	predicted gene, 68491	602 bp upstream
Rr679623	regulatory region 679623	1806 bp distal
Rr679624	regulatory region 679624	740 bp distal
Rr679625	regulatory region 679625	1302 bp proximal
Tssr2885	transcription start site region 2885	1949 bp upstream
Tssr89769	transcription start site region 89769	1861 bp upstream
Tssr89770	transcription start site region 89770	1262 bp upstream
Tssr89771	transcription start site region 89771	1233 bp upstream
Tssr89772	transcription start site region 89772	1045 bp upstream
Tssr89773	transcription start site region 89773	1947 bp downstream
Tssr89774	transcription start site region 89774	1965 bp downstream