rs29835540 SNP Detail

Summary

• ID
  rs29835540
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44388316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTGAGTT CCACAGAAGT
  CAAGATGATG CTTCCTGGTC ATGCTTAGCT CAAGGATCTT TCCTGGGAGC AGCCTAAGTC
  ACCCTCATAC TGAATTGTAA TTGTCAGCAT CTTGTCTGCC CCTAGCTAGA CTGTTGGCTG
  TGTAAAGACA AGGGACCATA CCTGTCATAT CACCAATATA AATCTAGTGT CCAGTCCAGT
  R
  CTTGGAAAAT AGTAGGTCTT CAGTAAATAT TTATTGAATG ACTAAGAAGG AAGGGTTAGT
  CAGAAAAGGA GTCCAAAAGA AGAAGAAGAA GAAGAAGAAG AAGAAGAAGA AGAAGAAGAA
  GAAGAAGAAG AAGACGACGA CGACGACTGA GTTATCAAAA CTCACAAGAA GAGCTGGCTA
  TGATGGCGGA AGCCAGAACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46345022	mCV25082948	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss136396126	ENSMUSSNP2397032	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29835540					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44388316 () rs orientation: forward

Symbol	Name	Function Class
C030014I23Rik	RIKEN cDNA C030014I23 gene	within coordinates
Cpgi21659	CpG island 21659	1421 bp proximal
Gm10023	predicted gene 10023	905 bp downstream
Gm22540	predicted gene, 22540	504 bp upstream
Gm47204	predicted gene, 47204	within coordinates
Rr195028	regulatory region 195028	716 bp distal
Rr203857	regulatory region 203857	750 bp distal
Rr206312	regulatory region 206312	484 bp proximal
Rr209143	regulatory region 209143	within coordinates